FastQCFastQC Report
Wed 8 May 2024
EGAF00007963191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472196
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57161.2105142779693179No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7460.1579852434158697No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6290.13320739692839415No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4890.10355869172970546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4890.10355869172970546No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4860.1029233623325907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)