FastQCFastQC Report
Wed 8 May 2024
EGAF00007963193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476002
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45250.950626257872866No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31260.6567199297481944No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18670.3922252427510809No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16880.35462035873798853No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13320.27983075701362603No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13050.27415851193902546No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9030.18970508527275096No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6730.14138596056319092No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6610.13886496275225735No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6490.13634396494132378No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6420.13487338288494585No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5960.12520955794303384No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5860.12310872643392255No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5630.11827681396296655No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5570.11701631505749976No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5500.11554573300112184No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5450.1144953172465662No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5420.1138650677938328No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC5370.11281465203927714No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5210.10945332162469905No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5190.10903315532287679No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5150.10819282271923227No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5070.10651215751194323No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC4970.10441132600283191No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4930.10357099339918739No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4840.10168024504098722No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4830.1014701618900761No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG4830.1014701618900761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)