FastQCFastQC Report
Wed 8 May 2024
EGAF00007963195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449787
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61181.3601993832636337No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43210.9606769426417394No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17340.3855158108171201No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16250.3612821179802884No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11940.26545898391905504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11870.26390269171852454No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8170.1816415325476281No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6510.14473517464933403No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6210.13806535093277486No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6070.1349527665317139No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5860.1302838899301225No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5480.1218354465558142No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5410.12027915435528372No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5300.1178335523258787No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5280.11738889741144143No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC5160.11472096792481774No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5130.11405398555316183No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5080.11294234826706863No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5080.11294234826706863No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5050.11227536589541272No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4980.11071907369488224No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4980.11071907369488224No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG4820.10716183437938402No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4710.10471623234997898No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4650.10338226760666716No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4520.10049201066282484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)