FastQCFastQC Report
Wed 8 May 2024
EGAF00007963197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479076
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47150.9841862251500806No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30100.6282927969674957No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19560.4082859504546251No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17040.3556846930340906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13020.2717731633394284No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12150.2536132054204343No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8970.1872354281992836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6810.14214863612453973No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6750.14089622523357465No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6440.1344254356302549No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6150.12837211632392356No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5850.12211006186909801No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5810.12127512127512127No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5800.12106638612662708No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5660.11814409404770851No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5630.11751788860222595No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5590.1166829480082492No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5580.11647421285975502No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5450.11376065592933063No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5400.1127169801868597No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5380.11229950988987134No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC5380.11229950988987134No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5370.11209077474137714No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5330.11125583414740041No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG5320.11104709899890622No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5230.10916848266245857No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5010.10457630939558651No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC4840.10102781187118536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)