FastQCFastQC Report
Wed 8 May 2024
EGAF00007963199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460190
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58741.2764293009409158No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45610.9911123666311741No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17840.3876659640583237No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16850.3661531106716791No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12810.27836328473022015No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11670.2535909081031748No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8020.17427584258675766No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6600.14341902257763098No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6590.14320172102827092No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6530.14189791173211064No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6340.13776918229426977No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5790.12581759707946716No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.1253829939807471No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5360.11647363045698515No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5360.11647363045698515No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5240.1138660118646646No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5210.11321410721658447No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5080.11038918707490385No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5070.11017188552554379No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG5060.10995458397618375No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5030.10930267932810361No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5000.10865077468002347No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC4960.10778156848258327No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4870.10582585453834285No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4870.10582585453834285No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA4820.10473934679154262No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4770.10365283904474239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)