FastQCFastQC Report
Wed 8 May 2024
EGAF00007963203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460540
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62431.3555825769748555No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16190.3515438398401876No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10150.2203934511660225No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5940.12897902462326835No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5400.11725365874842578No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5250.1139966126720806No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4950.10748252051939028No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4910.10661397489903157No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4710.10227124679723804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)