FastQCFastQC Report
Wed 8 May 2024
EGAF00007963205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489260
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31490.6436250664268487No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17920.3662674242733925No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10760.2199239668070147No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6260.1279483301312186No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6080.12426930466418673No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5560.11364100887053918No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5000.10219515186199568No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4910.10035563912847974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)