FastQCFastQC Report
Wed 8 May 2024
EGAF00007963209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498305
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT71151.427840378884418No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30450.6110715324951586No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25880.5193606325443253No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20110.40356809584491427No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15440.30985039283169946No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14680.29459868955760027No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12100.24282317054815827No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11650.23379255676744165No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG10740.21553064889977022No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10280.20629935481281544No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9840.19746942133833695No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG9470.1900442500075255No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9450.1896428893950492No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9250.18562928327028627No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9110.18281975898295222No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8760.17579594826461706No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG8400.16857145724004374No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8340.16736737540261487No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8120.16295240866537564No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8060.16174832682794674No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7210.14469050079770424No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6940.13927213252927423No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6770.13586056732322574No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6690.13425512487332056No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG6260.12562587170508024No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6210.12462247017388949No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5960.11960546251793579No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5850.11739797914931617No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA5760.11559185639317285No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5250.10535716077502734No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4990.10013947281283551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)