FastQCFastQC Report
Wed 8 May 2024
EGAF00007963211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470691
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68211.4491460427329181No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62721.332509013344211No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25540.5426065083037491No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18350.389852365989577No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14370.30529583102290037No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13170.279801398369631No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11840.25154506884559086No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10960.2328491515665267No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG9840.2090543477568086No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9500.20183092517171564No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9340.19843166748461308No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8860.18823389442330532No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG8780.18653426557975403No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8750.1858969047634223No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8610.18292255428720752No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8310.1765489461238902No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG7870.1672009874843581No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7770.165076451429919No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7480.15891529687204559No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7460.15849038966115775No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6720.1427688228583083No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6430.1366076683004349No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6360.1351204930623275No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6210.13193368898066885No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5590.11876156544314637No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5560.11812420462681461No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG5440.1155747613614877No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA5210.11068832843627774No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4830.1026150914294091No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4820.10240263782396519No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4750.10091546258585782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)