FastQCFastQC Report
Wed 8 May 2024
EGAF00007963215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479174
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68781.4353867279944237No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61701.287632467537888No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG24700.5154703719316991No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19540.40778506346337656No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13930.2907085943728166No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13010.2715088882117978No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12100.252517874509051No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11140.23248339851494448No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG10200.2128663074373818No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG9670.20180560714896886No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9660.2015969146906969No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9420.1965882956921703No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8960.1869884426116609No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8880.18531890294548536No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8740.18239720852967814No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8310.1734234328239846No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7950.16591050432619467No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG7880.16444965711829104No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7690.16048450041112414No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7350.15338895682987808No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6520.1360674827933068No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6480.13523271296021905No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG6340.13231101854441182No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6330.1321023260861399No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6270.13085017133650823No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6040.12605024479625354No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.11332000484166503No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA5130.10705923109350673No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5100.1064331537186909No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4990.10413753667769955No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4870.10163322717843622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)