FastQCFastQC Report
Wed 8 May 2024
EGAF00007963217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462832
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37790.8164949700971411No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30070.6496957859439277No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27680.5980571784146299No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC22040.4761987070902617No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18480.39928094859473845No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13580.29341100010370935No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11300.24414906488747534No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10850.23442631451585025No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7930.17133646765997165No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7670.16571887855636602No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6300.13611850520275176No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6280.13568638296401286No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5590.120778165727521No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5270.11386420990769869No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5200.11235178207211255No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5000.10803055968472361No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4840.10457358177481245No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT4710.10176478722300965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)