FastQCFastQC Report
Wed 8 May 2024
EGAF00007963219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436430
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58141.3321723987810186No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34790.7971496001649749No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25880.5929931489585959No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC20170.4621588800036661No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17150.3929610705038609No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11330.25960635153403755No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10770.24677496964003393No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9800.22454918314506336No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7790.1784936874183718No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6850.15695529638200856No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5720.13106340077446557No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5470.12533510528607109No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5400.12373118254932061No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5110.11708635978278303No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT4690.10746282336228032No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4670.10700455972320877No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4650.10654629608413721No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4490.10288018697156473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)