FastQCFastQC Report
Wed 8 May 2024
EGAF00007963221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464603
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37990.8176873588848974No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29910.6437754383850298No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27950.6015888834122897No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC21800.4692178053090488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18250.3928084838023No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12730.27399736979744No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11340.24407935377085385No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10300.22169465113225698No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8600.18510427181916606No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7590.16336528175668258No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6310.1358148785091788No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6120.13172536552712746No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5710.1229006269869114No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5640.12139396430931354No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5560.11967206410634454No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT5170.11127780061687075No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4790.10309877465276805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)