FastQCFastQC Report
Wed 8 May 2024
EGAF00007963223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442203
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58091.3136500656938104No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35860.8109397720051651No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26300.5947494702659186No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC20070.4538639493626231No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16940.38308197818648904No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12270.27747437262976504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10390.2349599618274865No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9960.22523592105888018No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7840.17729413866482135No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7160.161916585821444No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5920.1338751659305794No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5700.12890007530478084No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5660.12799551337281745No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5340.12075901791711047No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5300.11985445598514709No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT4980.11261796052944009No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4770.10786901038663238No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4680.10583374603971478No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4670.10560760555672397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)