FastQCFastQC Report
Wed 8 May 2024
EGAF00007963225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485169
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32650.6729613804674247No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32630.6725491529755611No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24830.5117804311487337No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20480.4221209516683877No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17620.36317242033188435No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14970.3085522776599494No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11300.23290853290296784No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11240.23167185042737687No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10950.2256945517953538No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10320.21270938580164853No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9410.19395303492185195No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8850.1824106651496695No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8490.17499057029612364No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8230.16963161290189605No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7940.16365431426987295No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7830.16138706306462286No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7090.14613464586566743No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7080.14592853211973558No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6820.14056957472550802No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6310.13005777368298468No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG6280.12943943244518918No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6100.12572938501841627No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5920.12201933759164332No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5650.11645426645148392No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5590.11521758397589293No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5520.11377478775437012No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA5350.110270854073529No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5210.1073852616304834No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4990.10285075921998314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)