FastQCFastQC Report
Wed 8 May 2024
EGAF00007963227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458296
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62041.3537102658543823No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30380.6628903590692478No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21890.4776389058599682No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19870.4335625883708345No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17000.3709393056016199No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13320.2906418559184457No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11330.24722013720390312No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10580.2308551678391258No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9900.21601759561506098No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9670.21099900500986263No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8800.1920156405467209No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8180.17848726587183827No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7570.16517709078848605No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7330.1599403005917573No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7320.15972210100022693No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7060.15404891162043743No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6740.14706652469146578No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6670.14553912755075324No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5920.12917415818597588No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5810.12677396267914187No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG5770.1259011643130204No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5690.12415556758077749No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5670.12371916839771675No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5480.11957337615863983No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5200.11346378759578962No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4990.10888159617365195No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4770.10408120515998392No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA4610.1005900116954981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)