FastQCFastQC Report
Wed 8 May 2024
EGAF00007963229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489140
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34800.7114527538128144No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32300.6603426421883305No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24870.5084433904403648No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20440.41787627264177946No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17520.3581796622643824No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15810.3232203459132355No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12150.2483951424949912No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11260.23019994275667496No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10940.22365784846874104No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10120.2068937318559104No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9560.195445066852026No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8420.17213885595126138No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8230.1682544874678006No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8160.1668234043423151No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7960.16273459541235638No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7820.15987242916138528No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7250.148219323711003No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7170.1465838001390195No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6760.13820174183260417No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6560.13411293290264548No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6320.129206362186695No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6260.12797971950770742No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG6200.1267530768287198No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6100.12470867236374045No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6010.12286870834525904No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5590.11428220959234575No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5150.10528682994643661No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5050.10324242548145725No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA4950.1011980210164779No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4930.10078914012348203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)