FastQCFastQC Report
Wed 8 May 2024
EGAF00007963232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470946
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24990.5306340854365469No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24390.5178937712603993No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16080.34144041992075524No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15210.3229669643653412No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13140.27901288045763206No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12510.2656355505726771No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9910.21042752247603758No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9660.20511905823597612No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9330.19811188543909491No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9020.19152938978141867No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8920.18940600408539407No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA8300.1762410127700416No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7700.163500698593894No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7540.16010328148025466No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7540.16010328148025466No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7340.15585651008820545No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6510.13823240881120127No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6440.13674603882398406No Hit
CGGCTGCTGTGGTTGCAGCGGGAATGGCTGTTGAGGCTGCTGCG6290.13356096027994718No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6110.1297388660271029No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5720.12145766181260696No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5090.10808033192765201No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5020.10659396194043479No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4850.10298420625719296No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4740.10064848199156592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)