FastQCFastQC Report
Wed 8 May 2024
EGAF00007963233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470946
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32930.6992309097009No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31460.6680171399693383No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24780.5261749754748952No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18010.38242176385403No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16750.35566710408412006No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16520.3507833169832635No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15100.3206312400997142No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14670.31150068160680844No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12700.2696699833951239No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11480.24376467790362377No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10080.21403727815927942No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10060.21361260102007446No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9620.20426970395756627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8740.1855839098325498No Hit
GCCCAGTCTTCCGGCGATCGTCAGACCGTCT8290.1760286742004391No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8240.17496698135242683No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8160.17326827279560714No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7520.15967860434104972No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6870.14587659731688984No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6790.14417788876007015No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6630.1407804716464308No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6360.1350473302671644No Hit
TTTCCTCAGACCCAGCAGTCTTTCCCGCTGC6090.12931418888789797No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5600.11890959897737745No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5490.11657387471175039No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5370.11402581187652087No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5170.10977904048447168No Hit
GGTCAGCAACCGGGTCAGTGGCAACAGCCGG4970.10553226909242247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)