FastQCFastQC Report
Wed 8 May 2024
EGAF00007963234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446976
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23670.5295586340206185No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22530.5040539089347079No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15160.33916809851088203No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14220.3181378865979381No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12660.28323668384879724No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11170.2499015607101947No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9440.21119702176403207No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8980.20090564146620846No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8940.2000107388316151No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8740.19553622565864834No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8080.18077033218785796No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA7930.17741444730813288No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7410.16578071305841924No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7160.16018757159221075No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7120.1592926689576174No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6620.14810638602520046No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6610.14788266036655212No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6080.13602520045819014No Hit
CGGCTGCTGTGGTTGCAGCGGGAATGGCTGTTGAGGCTGCTGCG5620.12573382016036655No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5570.12461519186712484No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5230.11700851947308133No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5110.11432381156930127No Hit
CGGCTGCTGCGGAATGATCTGTTCGGACTGTTGCGGGAACGGCT4830.10805949312714777No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4640.10380870561282933No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4540.10157144902634595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)