FastQCFastQC Report
Wed 8 May 2024
EGAF00007963235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446976
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61401.3736755441008017No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31330.7009324885452463No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23380.5230705899198167No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17050.3814522479954181No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15490.34655104524627717No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15250.34118162943871705No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14510.32462593069874No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13890.31075493986254293No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12040.2693656930126002No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10820.24207116265750286No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9940.222383304696449No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9270.20739368556701032No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9090.20336662371134023No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8030.17965170389461627No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7980.17853307560137457No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7810.17472973940435282No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7690.17204503150057274No Hit
GCCCAGTCTTCCGGCGATCGTCAGACCGTCT7550.168912872279496No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7030.15727913802978236No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6840.15302835051546393No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6290.14072343928980527No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6040.13513029782359678No Hit
TTTCCTCAGACCCAGCAGTCTTTCCCGCTGC5540.12394401489117983No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5500.12304911225658648No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5290.11835087342497136No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4890.1094018470790378No Hit
CAGCCGTTCCCTCTGCAACCGCAGCAGCCGT4570.10224262600229096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)