FastQCFastQC Report
Wed 8 May 2024
EGAF00007963236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453764
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23620.52053490360628No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23540.5187718726033798No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15860.34952089632496186No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15830.34885975969887434No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12850.2831868548408424No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12080.2662176814379281No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9790.21575091897991028No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9250.203850459710334No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9020.198781745576996No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8650.19062772718858262No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA8590.1893054539364075No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8390.184897876429157No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7220.1591135480117418No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7050.15536710713057889No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7040.15514672825521636No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6630.14611119436535291No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6320.1392794492291147No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6280.1383979337276646No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6090.13421073509577666No Hit
CGGCTGCTGTGGTTGCAGCGGGAATGGCTGTTGAGGCTGCTGCG5760.1269382322088134No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5580.12297141245228796No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5090.11217284755952434No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4900.10798564892763639No Hit
CGGCTGCTGCGGAATGATCTGTTCGGACTGTTGCGGGAACGGCT4810.10600223904937368No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4690.1033576925450234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)