FastQCFastQC Report
Wed 8 May 2024
EGAF00007963237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453764
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60091.3242566620534022No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31600.6963972461455734No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23820.5249424811135304No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17570.3872056840119533No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16830.37089764723512664No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15170.3343147539249478No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14730.3246180834089968No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14090.31051383538579524No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12860.2834072337162049No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12030.2651157870611155No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9430.2078172794668594No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9420.2075969005914969No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9100.20054477657989617No Hit
GCCCAGTCTTCCGGCGATCGTCAGACCGTCT8440.18599977080596963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8080.1780661312929188No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7740.170573249530593No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7710.16991211290450542No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7640.16836946077696777No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7290.16065620013927945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6400.14104248023201488No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6200.13663490272476442No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5890.12980315758852617No Hit
TTTCCTCAGACCCAGCAGTCTTTCCCGCTGC5680.1251752012059132No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5510.1214287603247503No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5220.11503777293923713No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4790.10556148129864863No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4730.10423920804647349No Hit
CAGCCGTTCCCTCTGCAACCGCAGCAGCCGT4720.10401882917111098No Hit
GGTCAGCAACCGGGTCAGTGGCAACAGCCGG4680.10313731366966088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)