FastQCFastQC Report
Wed 8 May 2024
EGAF00007963238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510773
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16420.3214735312947239No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14470.2832961021823785No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12660.24785961669861173No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9210.18031493442292368No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8870.1736583570392327No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8650.1693511599086091No Hit
ACCCGGGTCACCCTTATCGCCTTTGTCGCCTTTCGCGCCTACCA7700.15075189957182544No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7110.13920077999424402No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6520.1276496604166626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)