FastQCFastQC Report
Wed 8 May 2024
EGAF00007963239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510773
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31570.6180827882444844No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29420.5759897253770266No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16780.32852167205392613No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13310.2605854264027268No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11750.2300434831128505No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9580.18755885686988152No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9470.18540525830456975No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8570.16778490640656415No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG8080.15819160370653892No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7960.1558422234534715No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5170.10121913256965424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)