FastQCFastQC Report
Wed 8 May 2024
EGAF00007963241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483713
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65221.348320181595285No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27170.5616967085854628No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16080.3324285268330601No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12160.2513887367095778No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11650.24084529462718596No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10050.20776782927066256No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8590.17758464213283495No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG7840.16207958024696462No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7600.1571179604434861No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7090.14657451836109428No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5440.11246338221217954No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4990.10316034508065733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)