FastQCFastQC Report
Wed 8 May 2024
EGAF00007963243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512661
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31020.605078209577089No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29230.570162348998656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16780.3273118103386058No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13440.2621615453486807No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12340.24070487125020237No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10590.2065692533662596No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8610.16794723998899858No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8210.16014481304409736No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG7550.14727080858501035No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7260.141614049049957No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5430.10591794577703394No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5260.10260191432545093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)