FastQCFastQC Report
Wed 8 May 2024
EGAF00007963245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491263
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61241.2465827876310653No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27200.5536749154729748No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14540.29597181143297985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12970.264013369620753No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11880.24182566161099045No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10090.20538896680596747No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8510.17322696803952262No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7670.15612818388521016No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG7510.15287127261772207No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7040.1433040957694758No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5210.10605317314758082No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5030.10238914797165673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)