FastQCFastQC Report
Wed 8 May 2024
EGAF00007963247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514323
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32210.6262601516945577No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17740.344919437785205No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14330.2786186890339339No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11010.2140678134168606No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10810.21017920645197666No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10700.2080404726212905No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9670.18801414675213823No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8150.15846073381902034No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6540.12715744775170468No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5920.11510276616056446No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5840.1135473233746109No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5790.1125751716333899No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5750.11179745024041313No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5690.11063086815094794No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5240.1018815024799591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)