FastQCFastQC Report
Wed 8 May 2024
EGAF00007963248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484547
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13940.2876913901025081No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11530.23795421290401136No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9310.19213822394937952No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8770.18099379420365827No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8460.17459606601629976No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7640.1576730430690934No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5120.10566570425572751No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5100.10525294759847859No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC4910.10133175935461368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)