FastQCFastQC Report
Wed 8 May 2024
EGAF00007963249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484547
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65351.3486823775608971No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15600.32195019265416974No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13940.2876913901025081No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9990.20617195029584331No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9820.20266351870922736No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9700.20018697876573377No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8960.18491498244752316No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8090.16696006785719444No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6260.12919283371891685No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5760.11887391728769346No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5390.11123791912858813No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5250.10834862252784559No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5090.1050465692698541No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)