FastQCFastQC Report
Wed 8 May 2024
EGAF00007963251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514456
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31100.6045220582518233No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17180.3339449826612966No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14360.27912979924425024No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11020.214206851509167No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11020.214206851509167No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10160.19749016436779823No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9450.18368917847201705No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7340.14267498095075187No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7300.14189746061859518No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6060.1177943303217379No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5940.11546176932526785No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5680.1104078871662494No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5670.11021350708321023No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5450.10593714525634844No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5420.10535400500723092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)