FastQCFastQC Report
Wed 8 May 2024
EGAF00007963253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494724
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63211.2776821015354016No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15770.3187635934379573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14540.2939012459472352No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10850.21931420347506891No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9540.19283479273291773No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9440.19081346366863142No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9390.1898027991364882No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7610.1538231417921912No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6670.13482264858789952No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5920.1196626806057519No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5450.11016243400360605No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5440.10996030109717743No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5360.10834323784574833No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5010.10126858612074612No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4980.10066218740146021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)