FastQCFastQC Report
Wed 8 May 2024
EGAF00007963255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495748
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29570.5964724013006608No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19260.3885038366266732No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10460.21099429548883708No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10390.20958228777524066No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10280.20736341851101767No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10010.20191710304428861No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8590.17327351799704688No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7870.1587500100857694No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7450.15027796380419084No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7390.14906767147825106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.14826080992762453No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7320.1476556637646546No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6810.13736817899416637No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6280.12667726344836489No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5870.11840693255444298No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5740.11578463251490677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)