FastQCFastQC Report
Wed 8 May 2024
EGAF00007963257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466588
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57681.2362083894142155No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18390.39413786895505243No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10510.22525225680900493No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10080.2160364175675328No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9640.20660625648323575No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9240.1980333827702384No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8200.17574391111644536No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7300.15645494526220133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6900.147882071549204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6750.14466724390683No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6690.14338131284988043No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6380.13673733572230748No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6370.13652301387948254No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6170.13223657702298386No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5530.11851997908218813No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5290.11337625485438974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)