FastQCFastQC Report
Wed 8 May 2024
EGAF00007963259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497938
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29880.6000747080961887No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19350.3886025971104836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11320.22733754001502196No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11040.2217143499793147No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10500.21086962633902212No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9450.18978266370511993No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9010.18094622222043708No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8280.166285762484486No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7620.15303110025746178No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7410.14881370773068134No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7260.14580128449726673No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6960.13977643803043752No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6430.12913254260570592No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6310.12672260401897426No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5920.11889030361209628No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5860.11768533431873043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)