FastQCFastQC Report
Wed 8 May 2024
EGAF00007963261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476685
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55591.166178923188269No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18770.39376107911933456No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10740.22530601969854305No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10510.2204810304498778No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10260.21523647691871992No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8950.18775501641545256No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8210.1722311379632252No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7910.1659376737258357No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7210.15125292383859362No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7020.1472670631549136No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6920.14516924174245047No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6600.13845621322256838No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6580.13803664894007575No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5910.12398124547657258No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5770.12104429549912417No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5240.10992584201306942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)