FastQCFastQC Report
Wed 8 May 2024
EGAF00007963263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488225
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31390.6429412668339393No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28550.5847713656613243No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9230.18905217881099903No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8820.18065441138819194No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8480.17369040913513237No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8070.16529264171232527No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8050.16488299452096883No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7480.15320804956731016No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7400.15156946080188438No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7000.14337651697475548No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5740.1175687439192995No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5450.11162885964463105No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5320.10896615290081418No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5040.10323109222182396No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4950.10138767986071996No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4950.10138767986071996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)