FastQCFastQC Report
Wed 8 May 2024
EGAF00007963265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462805
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53071.1467032551506573No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30880.6672356608074674No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9170.19813960523330562No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8750.18906450881040612No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8200.17718045397089485No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7310.15794989250332214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7140.15427663918929138No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7040.1521159019457439No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6940.1499551647021964No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6930.14973909097784163No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5680.12272987543349792No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5500.11884054839511242No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5250.11343870528624365No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5090.10998152569656766No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4670.10090642927366818No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4650.10047428182495867No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4640.10025820810060393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)