FastQCFastQC Report
Wed 8 May 2024
EGAF00007963267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488178
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32270.6610293786282871No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27430.5618852139998115No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9540.19542052284207811No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9140.18722679022815447No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8570.17555072125331334No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8220.16838120521613018No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7620.15609060629524477No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7590.1554760763492005No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7440.15240342661897915No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7080.1450290672664479No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6000.12290598920885415No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5650.11573647317167099No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5440.1114347635493611No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5280.10815727050379166No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4890.10016838120521614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)