FastQCFastQC Report
Wed 8 May 2024
EGAF00007963269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470517
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52941.1251453188726444No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30550.6492857856358006No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9610.20424341734730095No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8580.18235260362537378No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8010.17023826981809373No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7880.16747535158134563No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7290.15493595342995045No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7260.15429835691377783No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6900.1466471987197062No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6560.13942110486974965No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5910.12560651368600922No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5380.11434230856695932No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5190.11030419729786596No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5060.10754127906111788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)