FastQCFastQC Report
Wed 8 May 2024
EGAF00007963279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505004
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17870.3538585832983501No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14220.2815819280639361No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13020.257819740041663No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11700.2316813332171626No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8970.17762235546649136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8890.17603820959833982No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7090.1403949275649302No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6790.1344543805593619No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6490.12851383355379364No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6350.12574157828452845No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5910.11702877600969497No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5910.11702877600969497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)