FastQCFastQC Report
Wed 8 May 2024
EGAF00007963281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483555
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24290.5023213491743441No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16980.35114930049322207No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13510.27938910775403003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12210.2525048856903558No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9880.20432008768392426No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8620.17826307245297845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7960.16461415971295923No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6510.13462791202655333No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6500.13442111031837123No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6460.1335939034856428No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6140.12697624882381528No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5340.11043211216924653No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4960.10257364725832635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)