FastQCFastQC Report
Wed 8 May 2024
EGAF00007963283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506110
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18480.3651380134753314No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14080.2782003912193002No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12930.2554780581296556No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11090.21912232518622432No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8850.17486317203769933No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8840.17466558653257197No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7150.14127363616605085No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7060.13949536661990478No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6950.13732192606350396No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6160.12171267115844381No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5810.1147971784789868No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5710.11282132342771334No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5460.10788168579952974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)