FastQCFastQC Report
Wed 8 May 2024
EGAF00007963285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488878
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24980.5109659260592622No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16300.33341651700424235No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13360.27327881393721953No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12410.25384656294617475No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10020.20495911045291465No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8500.17386750886724295No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8380.17141290874205833No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6920.14154860721897897No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6690.1368439569790418No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6280.12845740655132776No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5900.1206845061549098No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5490.11229795572719574No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5100.10432050532034577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)