FastQCFastQC Report
Wed 8 May 2024
EGAF00007963287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476420
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13710.28777129423617814No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12340.2590151546954368No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG10460.21955417488770412No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6120.12845808320389573No Hit
CAGCTGGACCGCATGCGTACTGATGTTCGTG5070.10641870618361948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)