FastQCFastQC Report
Wed 8 May 2024
EGAF00007963292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461835
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13380.2897138588456917No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC9860.2134961620492167No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5130.11107863197895353No Hit
CGGACGGTCGCCCTGGGCTTCGTAATACTGATCGTAGGTCTGGG4750.1028505851656977No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4690.10155141987939414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)