FastQCFastQC Report
Wed 8 May 2024
EGAF00007963293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461835
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23420.507107516753819No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13360.2892808037502571No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11980.2594000021652755No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG10000.21652754771725835No Hit
CAGCTGGACCGCATGCGTACTGATGTTCGTG5060.1095629391449327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)