FastQCFastQC Report
Wed 8 May 2024
EGAF00007963294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500357
Total Bases22 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12860.25701649022597867No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10040.2006567310939989No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8950.1788722851883755No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8010.16008569881104892No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5780.11551752049036988No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5620.11231980366018662No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5460.10912208683000338No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5310.10612422730170658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)