FastQCFastQC Report
Wed 8 May 2024
EGAF00007963295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500357
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13530.270406929452371No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12640.2526196295844767No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9520.1902641513959033No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9340.18666671996194717No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9220.18426843233930973No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8890.17767314137705678No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6630.13250539115071838No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6390.12770881590544353No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6360.12710924399978415No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6040.12071381033941767No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5360.10712351381113884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)